STRINGSTRING
nikD protein (Klebsiella pneumoniae) - STRING interaction network
"nikD" - Nickel ABC transporter ATP-binding protein in Klebsiella pneumoniae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikDNickel ABC transporter ATP-binding protein; With NikABCE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)    
Predicted Functional Partners:
nikC
Nickel transporter permease NikC; With NikABDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (277 aa)
  0.998
JG24_24180
With NikACDE is involved in nickel transport into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (314 aa)
  0.995
JG24_24175
Derived by automated computational analysis using gene prediction method- Protein Homology (522 aa)
 
  0.993
nikE
Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3); With NikABCD is involved with nickel transport into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
 
 
0.986
nikR
Nickel-responsive regulator; Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel (132 aa)
 
     
  0.960
JG24_13885
Derived by automated computational analysis using gene prediction method- Protein Homology (315 aa)
 
  0.752
JG24_13880
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1); Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
  0.745
JG24_12215
Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
 
  0.733
JG24_14935
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1); With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
 
  0.724
JG24_12220
Derived by automated computational analysis using gene prediction method- Protein Homology (320 aa)
 
  0.714
Your Current Organism:
Klebsiella pneumoniae
NCBI taxonomy Id: 573
Other names: ATCC 13883, Bacillus pneumoniae, Bacterium pneumoniae crouposae, CCUG 225, CIP 82.91, DSM 30104, HAMBI 450, Hyalococcus pneumoniae, IFO 14940, K. pneumoniae, Klebsiella pneumoniae, Klebsiella sp. M-AI-2, Klebsiella sp. PB12, Klebsiella sp. RCE-7, LMG 2095, NBRC 14940, NCTC 9633
Server load: low (16%) [HD]