STRINGSTRING
vapC protein (Klebsiella pneumoniae) - STRING interaction network
"vapC" - Ribonuclease VapC in Klebsiella pneumoniae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapCRibonuclease VapC; Toxic component of a toxin-antitoxin (TA) module. An RNase (127 aa)    
Predicted Functional Partners:
JG24_25870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (82 aa)
 
        0.977
JG24_00860
Virulence-associated protein vagC; Derived by automated computational analysis using gene prediction method- Protein Homology (76 aa)
     
 
  0.650
argA
Amino-acid acetyltransferase; Catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the acetyltransferase family. ArgA subfamily (443 aa)
           
  0.540
JG24_25865
Lipase, GDXG family; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
              0.531
argE
Acetylornithine deacetylase; Catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase M20A family. ArgE subfamily (383 aa)
           
  0.526
JG24_12280
Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (380 aa)
           
  0.526
JG24_10350
Catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)
           
  0.526
JG24_08985
Derived by automated computational analysis using gene prediction method- Protein Homology (391 aa)
           
  0.526
dsbG
Thiol-disulfide interchange protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process (249 aa)
           
  0.520
JG24_02275
Derived by automated computational analysis using gene prediction method- Protein Homology (277 aa)
 
          0.426
Your Current Organism:
Klebsiella pneumoniae
NCBI taxonomy Id: 573
Other names: ATCC 13883, Bacillus pneumoniae, Bacterium pneumoniae crouposae, CCUG 225, CIP 82.91, DSM 30104, HAMBI 450, Hyalococcus pneumoniae, IFO 14940, K. pneumoniae, Klebsiella pneumoniae, Klebsiella sp. M-AI-2, Klebsiella sp. PB12, Klebsiella sp. RCE-7, LMG 2095, NBRC 14940, NCTC 9633
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