STRINGSTRING
JG24_28525 protein (Klebsiella pneumoniae) - STRING interaction network
"JG24_28525" - Derived by automated computational analysis using gene prediction method: Protein Homology in Klebsiella pneumoniae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JG24_28525Derived by automated computational analysis using gene prediction method- Protein Homology (2106 aa)    
Predicted Functional Partners:
JG24_28520
Derived by automated computational analysis using gene prediction method- Protein Homology (1099 aa)
          0.974
JG24_28545
Derived by automated computational analysis using gene prediction method- Protein Homology (1169 aa)
 
          0.694
JG24_28540
Derived by automated computational analysis using gene prediction method- Protein Homology (528 aa)
 
          0.583
JG24_26575
ATP-dependent DNA helicase RecQ; Functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method- Protein Homology (608 aa)
   
 
  0.559
JG24_08655
Derived by automated computational analysis using gene prediction method- Protein Homology (1111 aa)
 
      0.492
rapA
RNA polymerase-associated protein RapA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair (968 aa)
   
 
  0.479
uvrD
Unwinds DNA duplexes with 3’ to 5’ polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair; Derived by automated computational analysis using gene prediction method- Protein Homology (720 aa)
   
 
  0.479
JG24_26360
Single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication; Derived by automated computational analysis using gene prediction method- Protein Homology (673 aa)
   
 
  0.479
helD
DNA helicase; Catalyzes the ATP-dependent unwinding of duplex DNA in the 3’ to 5’ direction with respect to the bound single strand; Derived by automated computational analysis using gene prediction method- Protein Homology (684 aa)
   
 
  0.479
JG24_00085
Derived by automated computational analysis using gene prediction method- Protein Homology (775 aa)
 
        0.460
Your Current Organism:
Klebsiella pneumoniae
NCBI taxonomy Id: 573
Other names: ATCC 13883, Bacillus pneumoniae, Bacterium pneumoniae crouposae, CCUG 225, CIP 82.91, DSM 30104, HAMBI 450, Hyalococcus pneumoniae, IFO 14940, K. pneumoniae, Klebsiella pneumoniae, Klebsiella sp. M-AI-2, Klebsiella sp. PB12, Klebsiella sp. RCE-7, LMG 2095, NBRC 14940, NCTC 9633
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