node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADL51287.1 | ADL51652.1 | Clocel_1539 | Clocel_1908 | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.516 |
ADL51287.1 | ADL51781.1 | Clocel_1539 | Clocel_2038 | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | PFAM: NUDIX hydrolase; KEGG: ckr:CKR_1135 hypothetical protein. | 0.452 |
ADL51287.1 | ADL52554.1 | Clocel_1539 | Clocel_2858 | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | KEGG: cno:NT01CX_1475 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. | 0.792 |
ADL51287.1 | ADL53537.1 | Clocel_1539 | Clocel_3871 | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.759 |
ADL51287.1 | pnp | Clocel_1539 | Clocel_1794 | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.759 |
ADL51287.1 | rplC | Clocel_1539 | Clocel_3733 | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.977 |
ADL51287.1 | rplD | Clocel_1539 | Clocel_3732 | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.990 |
ADL51287.1 | rplM | Clocel_1539 | Clocel_3698 | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.961 |
ADL51287.1 | rpsD | Clocel_1539 | Clocel_3705 | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
ADL51652.1 | ADL51287.1 | Clocel_1908 | Clocel_1539 | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | 0.516 |
ADL51652.1 | ADL51781.1 | Clocel_1908 | Clocel_2038 | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | PFAM: NUDIX hydrolase; KEGG: ckr:CKR_1135 hypothetical protein. | 0.442 |
ADL51652.1 | ADL52554.1 | Clocel_1908 | Clocel_2858 | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | KEGG: cno:NT01CX_1475 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. | 0.812 |
ADL51652.1 | ADL53537.1 | Clocel_1908 | Clocel_3871 | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.769 |
ADL51652.1 | pnp | Clocel_1908 | Clocel_1794 | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.640 |
ADL51652.1 | rplC | Clocel_1908 | Clocel_3733 | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.842 |
ADL51652.1 | rplD | Clocel_1908 | Clocel_3732 | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.779 |
ADL51652.1 | rplM | Clocel_1908 | Clocel_3698 | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.799 |
ADL51781.1 | ADL51287.1 | Clocel_2038 | Clocel_1539 | PFAM: NUDIX hydrolase; KEGG: ckr:CKR_1135 hypothetical protein. | PFAM: RNA binding S1 domain protein; KEGG: cbh:CLC_1202 30S ribosomal protein S1. | 0.452 |
ADL51781.1 | ADL51652.1 | Clocel_2038 | Clocel_1908 | PFAM: NUDIX hydrolase; KEGG: ckr:CKR_1135 hypothetical protein. | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.442 |
ADL51781.1 | ADL52554.1 | Clocel_2038 | Clocel_2858 | PFAM: NUDIX hydrolase; KEGG: ckr:CKR_1135 hypothetical protein. | KEGG: cno:NT01CX_1475 ATP-dependent RNA helicase; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase; helicase domain protein; Belongs to the DEAD box helicase family. | 0.797 |