Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DMR_16410 | DMR_16430 | DMR_16410 | DMR_16430 | Hypothetical protein. | Putative cytochrome c assembly protein. | 0.833 |
DMR_16410 | DMR_16440 | DMR_16410 | DMR_16440 | Hypothetical protein. | Bifunctional precorrin-2 oxidase/chelatase family protein. | 0.811 |
DMR_16410 | hemA | DMR_16410 | DMR_16420 | Hypothetical protein. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.811 |
DMR_16430 | DMR_16410 | DMR_16430 | DMR_16410 | Putative cytochrome c assembly protein. | Hypothetical protein. | 0.833 |
DMR_16430 | DMR_16440 | DMR_16430 | DMR_16440 | Putative cytochrome c assembly protein. | Bifunctional precorrin-2 oxidase/chelatase family protein. | 0.819 |
DMR_16430 | DMR_44070 | DMR_16430 | DMR_44070 | Putative cytochrome c assembly protein. | uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase family protein; Bifunctional protein. | 0.870 |
DMR_16430 | hemA | DMR_16430 | DMR_16420 | Putative cytochrome c assembly protein. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.929 |
DMR_16430 | hemB | DMR_16430 | DMR_04460 | Putative cytochrome c assembly protein. | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.546 |
DMR_16430 | hemC | DMR_16430 | DMR_08080 | Putative cytochrome c assembly protein. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.568 |
DMR_16430 | hemL | DMR_16430 | DMR_02220 | Putative cytochrome c assembly protein. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.619 |
DMR_16430 | nifJ | DMR_16430 | DMR_20070 | Putative cytochrome c assembly protein. | Pyruvate-flavodoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | 0.404 |
DMR_16440 | DMR_16410 | DMR_16440 | DMR_16410 | Bifunctional precorrin-2 oxidase/chelatase family protein. | Hypothetical protein. | 0.811 |
DMR_16440 | DMR_16430 | DMR_16440 | DMR_16430 | Bifunctional precorrin-2 oxidase/chelatase family protein. | Putative cytochrome c assembly protein. | 0.819 |
DMR_16440 | DMR_44070 | DMR_16440 | DMR_44070 | Bifunctional precorrin-2 oxidase/chelatase family protein. | uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase family protein; Bifunctional protein. | 0.999 |
DMR_16440 | hemA | DMR_16440 | DMR_16420 | Bifunctional precorrin-2 oxidase/chelatase family protein. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.887 |
DMR_16440 | hemB | DMR_16440 | DMR_04460 | Bifunctional precorrin-2 oxidase/chelatase family protein. | Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. | 0.640 |
DMR_16440 | hemC | DMR_16440 | DMR_08080 | Bifunctional precorrin-2 oxidase/chelatase family protein. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.873 |
DMR_16440 | hemL | DMR_16440 | DMR_02220 | Bifunctional precorrin-2 oxidase/chelatase family protein. | Glutamate-1-semialdehyde 2,1-aminomutase. | 0.782 |
DMR_16440 | nifJ | DMR_16440 | DMR_20070 | Bifunctional precorrin-2 oxidase/chelatase family protein. | Pyruvate-flavodoxin oxidoreductase; Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family. | 0.416 |
DMR_26920 | hemA | DMR_26920 | DMR_16420 | Putative flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.648 |
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