STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nifSCysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. (395 aa)    
Predicted Functional Partners:
nifU
Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 0.999
DMR_11270
Nitrogen-fixing NifU-like N-terminal domain protein.
 
 0.990
DMR_42670
ThiF family protein.
   
 0.962
DMR_26380
Hypothetical protein.
  
 0.931
nifS-2
Cysteine desulfurase.
  
  
 
0.906
DMR_13870
Hypothetical protein.
   
 
 0.892
DMR_23370
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 
 0.836
DMR_37120
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
   
 
 0.836
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
  
 
 0.821
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
    
 
 0.744
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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