Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DMR_04880 | DMR_36960 | DMR_04880 | DMR_36960 | Heat shock protein DnaJ family protein. | Hypothetical protein. | 0.780 |
DMR_04880 | clpA | DMR_04880 | DMR_23720 | Heat shock protein DnaJ family protein. | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | 0.827 |
DMR_04880 | dnaK | DMR_04880 | DMR_17370 | Heat shock protein DnaJ family protein. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.993 |
DMR_04880 | groEL | DMR_04880 | DMR_02710 | Heat shock protein DnaJ family protein. | 60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.867 |
DMR_04880 | groES | DMR_04880 | DMR_02720 | Heat shock protein DnaJ family protein. | 10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.781 |
DMR_04880 | grpE | DMR_04880 | DMR_17380 | Heat shock protein DnaJ family protein. | Protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] | 0.961 |
DMR_04880 | htpG | DMR_04880 | DMR_11440 | Heat shock protein DnaJ family protein. | Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. | 0.952 |
DMR_04880 | nifU | DMR_04880 | DMR_17100 | Heat shock protein DnaJ family protein. | Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.484 |
DMR_36960 | DMR_04880 | DMR_36960 | DMR_04880 | Hypothetical protein. | Heat shock protein DnaJ family protein. | 0.780 |
DMR_36960 | clpA | DMR_36960 | DMR_23720 | Hypothetical protein. | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | 0.798 |
DMR_36960 | dnaK | DMR_36960 | DMR_17370 | Hypothetical protein. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.981 |
DMR_36960 | groEL | DMR_36960 | DMR_02710 | Hypothetical protein. | 60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.838 |
DMR_36960 | groES | DMR_36960 | DMR_02720 | Hypothetical protein. | 10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.741 |
DMR_36960 | grpE | DMR_36960 | DMR_17380 | Hypothetical protein. | Protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent i [...] | 0.958 |
DMR_36960 | htpG | DMR_36960 | DMR_11440 | Hypothetical protein. | Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. | 0.915 |
DMR_36960 | nifU | DMR_36960 | DMR_17100 | Hypothetical protein. | Nitrogen fixation protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins. | 0.484 |
cbpA | clpA | DMR_30690 | DMR_23720 | Curved DNA-binding protein. | ATP-dependent Clp protease ATP-binding subunit ClpA; Belongs to the ClpA/ClpB family. | 0.803 |
cbpA | dnaK | DMR_30690 | DMR_17370 | Curved DNA-binding protein. | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.985 |
cbpA | groEL | DMR_30690 | DMR_02710 | Curved DNA-binding protein. | 60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.832 |
cbpA | groES | DMR_30690 | DMR_02720 | Curved DNA-binding protein. | 10 kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter. | 0.752 |
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