STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DMR_31750NikR family transcriptional regulator; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (139 aa)    
Predicted Functional Partners:
chpA
PemK-like protein 1.
  
 
 0.906
DMR_43420
Putative PemK protein.
  
 
 0.906
DMR_31760
Hypothetical protein.
  
    0.605
folE2
Hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
     
 0.593
cbiM
Cobalamin biosynthesis protein CbiM.
 
   
 0.585
cbiO
Putative cobalt ABC transporter ATP-binding protein.
 
   
 0.549
cbiQ
Putative cobalt ABC transporter permease protein.
 
   
 0.547
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
    
   0.540
DMR_30640
Hypothetical protein.
    
   0.540
DMR_22260
Hypothetical protein.
 
     0.478
Your Current Organism:
Desulfovibrio magneticus RS1
NCBI taxonomy Id: 573370
Other names: D. magneticus RS-1, Desulfovibrio magneticus 700980, Desulfovibrio magneticus RS-1, Desulfovibrio magneticus str. RS-1, Desulfovibrio magneticus strain RS-1
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