Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DMR_20420 | DMR_31800 | DMR_20420 | DMR_31800 | Hypothetical protein. | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | 0.806 |
DMR_20420 | DMR_46030 | DMR_20420 | DMR_46030 | Hypothetical protein. | Glutamate synthase large subunit; Belongs to the glutamate synthase family. | 0.925 |
DMR_20420 | gcvH | DMR_20420 | DMR_31770 | Hypothetical protein. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.800 |
DMR_20420 | gcvPA | DMR_20420 | DMR_31780 | Hypothetical protein. | Glycine dehydrogenase [decarboxylating] subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.839 |
DMR_20420 | gcvPB | DMR_20420 | DMR_31790 | Hypothetical protein. | Glycine dehydrogenase [decarboxylating] subunit 2. | 0.839 |
DMR_20420 | gcvT | DMR_20420 | DMR_18240 | Hypothetical protein. | Aminomethyltransferase. | 0.800 |
DMR_20420 | glnA | DMR_20420 | DMR_06110 | Hypothetical protein. | Glutamine synthetase type I. | 0.916 |
DMR_20420 | purQ | DMR_20420 | DMR_25900 | Hypothetical protein. | Phosphoribosylformylglycinamidine synthase. | 0.900 |
DMR_31800 | DMR_20420 | DMR_31800 | DMR_20420 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Hypothetical protein. | 0.806 |
DMR_31800 | DMR_46030 | DMR_31800 | DMR_46030 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Glutamate synthase large subunit; Belongs to the glutamate synthase family. | 0.835 |
DMR_31800 | gcvH | DMR_31800 | DMR_31770 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.997 |
DMR_31800 | gcvPA | DMR_31800 | DMR_31780 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Glycine dehydrogenase [decarboxylating] subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.991 |
DMR_31800 | gcvPB | DMR_31800 | DMR_31790 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Glycine dehydrogenase [decarboxylating] subunit 2. | 0.992 |
DMR_31800 | gcvT | DMR_31800 | DMR_18240 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Aminomethyltransferase. | 0.982 |
DMR_31800 | glnA | DMR_31800 | DMR_06110 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Glutamine synthetase type I. | 0.858 |
DMR_31800 | glyA | DMR_31800 | DMR_14920 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.925 |
DMR_31800 | glyA-2 | DMR_31800 | DMR_39990 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.925 |
DMR_31800 | purQ | DMR_31800 | DMR_25900 | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | Phosphoribosylformylglycinamidine synthase. | 0.815 |
DMR_46030 | DMR_20420 | DMR_46030 | DMR_20420 | Glutamate synthase large subunit; Belongs to the glutamate synthase family. | Hypothetical protein. | 0.925 |
DMR_46030 | DMR_31800 | DMR_46030 | DMR_31800 | Glutamate synthase large subunit; Belongs to the glutamate synthase family. | Putative dihydrolipoamide dehydrogenase; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | 0.835 |
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