STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79269.1COGs: COG0078 Ornithine carbamoyltransferase; InterProIPR006130:IPR002082:IPR017702:IPR006132:IPR 006131; KEGG: efa:EF2577 aspartate/ornithine carbamoyltransferase family protein; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; SPTR: Aspartate/ornithine carbamoyltransferase family protein; TIGRFAM: carbamoyltransferase YgeW; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: probable carbamoyltran [...] (398 aa)    
Predicted Functional Partners:
ADK79271.1
Peptidase M20; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650:IPR001261; KEGG: kol:Kole_2070 M20/DapE family protein YgeY; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: Peptidase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: putative selenium metabolism hydrolase; M20/DapE family protein YgeY.
 
  
 0.926
ADK80540.1
Amino-acid N-acetyltransferase; COGs: COG0548 Acetylglutamate kinase; InterPro IPR000209:IPR001048:IPR000182:IPR010167; KEGG: fsu:Fisuc_1504 amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; aspartate/glutamate/uridylate kinase; SPTR: Amino-acid N-acetyltransferase; TIGRFAM: amino-acid N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; Amino acid kinase family; TIGRFAM: amino-acid N-acetyltransferase; Belongs to the acetyltransferase family.
  
  
 0.865
argG
COGs: COG0137 Argininosuccinate synthase; InterPro IPR001518:IPR018223; KEGG: sti:Sthe_3259 argininosuccinate synthase; PFAM: argininosuccinate synthase; PRIAM: Argininosuccinate synthase; SPTR: Argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.837
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
  
 0.836
argH
COGs: COG0165 Argininosuccinate lyase; InterPro IPR009049:IPR020557:IPR000362:IPR003031; KEGG: ttr:Tter_0314 argininosuccinate lyase; PFAM: fumarate lyase; SPTR: Argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: Lyase; TIGRFAM: argininosuccinate lyase.
  
  
 0.836
ADK80515.1
M20/DapE family protein YgeY; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR001261:IPR002933:IPR011650:IPR017706; KEGG: kol:Kole_2070 M20/DapE family protein YgeY; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: Peptidase; TIGRFAM: M20/DapE family protein YgeY; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: putative selenium metabolism hydrolase; M20/DapE family protein YgeY.
 
  
 0.800
ADK80513.1
Selenate reductase YgfK; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterProIPR018247:IPR017900:IPR000759:IPR013027:IPR 017701:IPR017896; KEGG: ppr:PBPRA1943 putative selenate reductase subunit YgfK; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Predicted oxidoreductase, Fe-S subunit; TIGRFAM: selenate reductase YgfK; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: putative selenate reductase, YgfK subunit.
 
  
 0.797
ADK81863.1
Peptidase dimerization domain protein; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR002933:IPR011650:IPR001261; KEGG: mta:Moth_1646 peptidase; PFAM: peptidase dimerisation domain protein; peptidase M20; SPTR: Peptidase dimerisation; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: putative selenium metabolism hydrolase.
 
  
 0.793
ADK79270.1
Pyridoxal-5'-phosphate-dependent protein beta subunit; COGs: COG0031 Cysteine synthase; InterPro IPR001926; KEGG: pmo:Pmob_1727 pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme.
 
   
 0.792
ADK80514.1
Selenium metabolism protein SsnA; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680:IPR017700; KEGG: hmo:HM1_2652 amidohydrolase; PFAM: amidohydrolase; PRIAM: S-adenosylhomocysteine deaminase; SPTR: Protein SsnA; TIGRFAM: selenium metabolism protein SsnA; PFAM: Amidohydrolase family; TIGRFAM: putative selenium metabolism protein SsnA.
 
    0.752
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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