STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79386.1Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: monosacharide ABC transporter periplasmic monosacharide-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: ABC transporter, periplasmic sugar binding protein; PFAM: family. (318 aa)    
Predicted Functional Partners:
ADK79389.1
Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: sme:SM_b20352 sugar ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component.
 
 0.940
ADK79387.1
COGs: COG5618 periplasmic lipoprotein; InterPro IPR014582; KEGG: acr:Acry_1065 periplasmic lipoprotein-like protein; PFAM: periplasmic lipoprotein; SPTR: Periplasmic lipoprotein-like protein; PFAM: Predicted periplasmic lipoprotein (DUF2291).
 
    0.895
ADK80165.1
Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: sme:SM_b20352 sugar ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: ABC transporter, permease; PFAM: Branched-chain amino acid transport system / permease component.
 
 0.886
ADK79388.1
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: mlo:mll7012 ribose ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter related protein; PFAM: ABC transporter.
 
 
 0.847
ADK80163.1
COGs: COG5618 periplasmic lipoprotein; InterPro IPR014582; KEGG: rec:RHECIAT_PC0000970 hypothetical protein; PFAM: periplasmic lipoprotein; SPTR: Putative uncharacterized protein; PFAM: Predicted periplasmic lipoprotein (DUF2291).
 
    0.785
ADK80164.1
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: mlo:mll7012 ribose ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ATP-binding D-ribose transport protein (ABC superfamily, atp_bind); PFAM: ABC transporter.
 
 
 0.748
ADK81790.1
Ribose ABC transporter, substrate binding protein; COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: cvi:CV_3016 ribose ABC transporter, substrate binding protein; SPTR: Putative uncharacterized protein; PFAM: family.
  
     0.730
ADK80303.1
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.722
ADK79624.1
COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 001789:IPR004358:IPR013767:IPR008207:IPR005467:IPR000700; KEGG: dma:DMR_25470 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; response regulator receiver; Hpt domain protein; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: Sensor protein; TIGRFAM: PAS [...]
  
 
 0.714
ADK83212.1
COGs: COG0642 Signal transduction histidine kinase; InterProIPR003661:IPR003594:IPR001789:IPR008207:IPR 000014:IPR005467:IPR000700:IPR004358; KEGG: dal:Dalk_3917 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SPTR: Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regu [...]
  
 
 0.711
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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