STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADK79414.1KEGG: tde:TDE1445 hypothetical protein; SPTR: Putative lipoprotein. (255 aa)    
Predicted Functional Partners:
ADK79415.1
Glycoside hydrolase family 79; InterPro IPR005199; KEGG: mmw:Mmwyl1_1639 hypothetical protein; PFAM: Glycoside hydrolase family 79; SPTR: Putative uncharacterized protein; PFAM: Glycosyl hydrolase family 79, N-terminal domain.
       0.671
ADK79416.1
Protein of unknown function DUF2259, secreted; COGs: COG5497 secreted protein; InterPro IPR018725; KEGG: tde:TDE1519 hypothetical protein; PFAM: Protein of unknown function DUF2259, secreted; SPTR: Putative uncharacterized protein; PFAM: Predicted secreted protein (DUF2259).
       0.520
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.