STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ADK80863.1Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR000595:IPR001440:IPR013105:IPR019734:IPR 013026; KEGG: bhy:BHWA1_00483 cAMP-binding protein; PFAM: cyclic nucleotide-binding; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SPTR: Cyclic nucleotide-binding protein with tetratricopeptide repeat; PFAM: Cyclic nucleotide-binding domain. (326 aa)    
Predicted Functional Partners:
ADK80864.1
Putative transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR002373:IPR000595:IPR018488; KEGG: tde:TDE2616 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; SPTR: Cyclic nucleotide-binding protein; PFAM: Cyclic nucleotide-binding domain.
   
 0.989
ADK80852.1
P83100 family protein; InterPro IPR007926; KEGG: tde:TDE2699 antigen, putative; PFAM: P83100 family protein; SPTR: Antigen, putative; PFAM: Borrelia P83/100 protein.
 
 
 0.812
ADK83228.1
COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: tde:TDE2028 OmpA family protein; SPTR: OmpA family protein; PFAM: OmpA family.
 
  
 0.810
ADK81203.1
OmpA/MotB domain protein; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: tde:TDE2028 OmpA family protein; PFAM: OmpA/MotB domain protein; SPTR: OmpA family protein; PFAM: OmpA family.
 
  
 0.782
ADK82036.1
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: tde:TDE1919 hypothetical protein; PFAM: Radical SAM domain protein; SPTR: Conserved domain protein; PFAM: Radical SAM superfamily.
 
  
 0.781
ADK82298.1
KEGG: tde:TDE2293 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.757
ADK81479.1
Restriction endonuclease; InterProIPR019734:IPR001440:IPR013105:IPR007560:IPR 013026; KEGG: tde:TDE1125 TPR domain-containing protein; PFAM: restriction endonuclease; Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: TPR domain protein; PFAM: Restriction endonuclease; Tetratricopeptide repeat.
 
   
 0.748
ADK80531.1
KEGG: tde:TDE2433 treponemal membrane protein, putative; SPTR: Treponemal membrane protein, putative.
 
   
 0.747
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.742
ADK80691.1
Flagellar assembly protein FliH/Type III secretion system HrpE; COGs: COG1317 Flagellar biosynthesis/type III secretory pathway protein; InterPro IPR018035; KEGG: tde:TDE1217 flagellar assembly protein H; PFAM: Flagellar assembly protein FliH/Type III secretion system HrpE; SPTR: Flagellar assembly protein fliH, putative; PFAM: Flagellar assembly protein FliH.
 
  
 0.733
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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