STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ADK83097.1Radical SAM domain-containing protein; COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR000169; KEGG: ote:Oter_0373 radical SAM domain-containing protein; SPTR: Radical SAM domain protein; TIGRFAM: KamA family protein. (461 aa)    
Predicted Functional Partners:
ADK83098.1
FAD dependent oxidoreductase; COGs: COG0578 Glycerol-3-phosphate dehydrogenase; InterPro IPR006076:IPR000447; KEGG: dvl:Dvul_0583 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Anaerobic glycerol-3-phosphate dehydrogenase, subunit A, truncation; PFAM: FAD dependent oxidoreductase.
       0.529
ADK83099.1
COGs: COG0479 Succinate dehydrogenase/fumarate reductase Fe-S protein subunit; InterProIPR001041:IPR006058:IPR017900:IPR004489:IPR 017896; KEGG: dvm:DvMF_1127 succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; SPTR: Succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein.
       0.529
ADK79763.1
COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR002880:IPR019752:IPR019456:IPR001450:IPR 011766:IPR017900:IPR017896:IPR011895; KEGG: tde:TDE0665 pyruvate ferredoxin/flavodoxin oxidoreductase family protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; SPTR: Pyruvate ferredoxin/flavodoxin oxi [...]
   
 
 0.506
ADK80948.1
MCP methyltransferase, CheR-type; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: gbm:Gbem_1595 MCP methyltransferase, CheR-type; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: MCP methyltransferase, CheR-type; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.476
ADK82016.1
MCP methyltransferase, CheR-type; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: pca:Pcar_1199 methylase of chemotaxis methyl-accepting protein, CheR-like; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: MCP methyltransferase, CheR-type; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.476
ADK82024.1
MCP methyltransferase, CheR-type; COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545:IPR000780; KEGG: tpp:TPASS_0364 purine-binding chemotaxis protein; PFAM: MCP methyltransferase CheR-type; CheW domain protein; SMART: CheW domain protein; MCP methyltransferase CheR-type; SPTR: Chemotaxis protein CheW; PFAM: CheW-like domain; CheR methyltransferase, SAM binding domain.
    
   0.476
ADK83312.1
InterPro IPR000462; KEGG: tcu:Tcur_4106 CDP-alcohol phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; SPTR: Putative uncharacterized protein; PFAM: CDP-alcohol phosphatidyltransferase.
 
     0.445
ADK82751.1
tRNA synthetase class II (D K and N); COGs: COG2269 Truncated possibly inactive lysyl-tRNA synthetase (class II); InterPro IPR004364:IPR018149:IPR006195; KEGG: tpp:TPASS_1040 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); SPTR: tRNA synthetase, class II family; PFAM: tRNA synthetases class II (D, K and N); TIGRFAM: lysyl-tRNA synthetase-related protein GenX; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
  
 0.426
ADK83067.1
InterPro IPR000182; KEGG: cpc:Cpar_1398 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: GCN5-related N-acetyltransferase.
 
  
 0.418
Your Current Organism:
Sediminispirochaeta smaragdinae
NCBI taxonomy Id: 573413
Other names: S. smaragdinae DSM 11293, Sediminispirochaeta smaragdinae DSM 11293, Spirochaeta smaragdinae DSM 11293
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