I0YIZ1_COCSC protein (Coccomyxa subellipsoidea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I0YIZ1_COCSC

Protein kinase domain-containing protein. (592 aa)

Predicted Functional Partners:

I0YL80_COCSC

0.978

I0Z2T5_COCSC

0.945

I0YZV7_COCSC

0.941

I0YJ35_COCSC

0.861

CYN

0.861

I0YPZ9_COCSC

0.692

I0YWK3_COCSC

0.637

I0YZK5_COCSC

0.526

I0Z1V8_COCSC

0.502

I0YKR4_COCSC

0.501

Your Current Organism:

Coccomyxa subellipsoidea

NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYN	I0YIZ1_COCSC	I0Z5X9	I0YIZ1	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.	Protein kinase domain-containing protein.	0.861
CYN	I0YZV7_COCSC	I0Z5X9	I0YZV7	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	0.954
CYN	I0Z2T5_COCSC	I0Z5X9	I0Z2T5	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.	Uncharacterized protein.	0.958
I0YIZ1_COCSC	CYN	I0YIZ1	I0Z5X9	Protein kinase domain-containing protein.	Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.	0.861
I0YIZ1_COCSC	I0YJ35_COCSC	I0YIZ1	I0YJ35	Protein kinase domain-containing protein.	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family.	0.861
I0YIZ1_COCSC	I0YKR4_COCSC	I0YIZ1	I0YKR4	Protein kinase domain-containing protein.	Kinase-like protein.	0.501
I0YIZ1_COCSC	I0YL80_COCSC	I0YIZ1	I0YL80	Protein kinase domain-containing protein.	Uncharacterized protein.	0.978
I0YIZ1_COCSC	I0YPZ9_COCSC	I0YIZ1	I0YPZ9	Protein kinase domain-containing protein.	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	0.692
I0YIZ1_COCSC	I0YWK3_COCSC	I0YIZ1	I0YWK3	Protein kinase domain-containing protein.	DNA ligase.	0.637
I0YIZ1_COCSC	I0YZK5_COCSC	I0YIZ1	I0YZK5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.526
I0YIZ1_COCSC	I0YZV7_COCSC	I0YIZ1	I0YZV7	Protein kinase domain-containing protein.	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	0.941
I0YIZ1_COCSC	I0Z1V8_COCSC	I0YIZ1	I0Z1V8	Protein kinase domain-containing protein.	Kinase-like protein.	0.502
I0YIZ1_COCSC	I0Z2T5_COCSC	I0YIZ1	I0Z2T5	Protein kinase domain-containing protein.	Uncharacterized protein.	0.945
I0YJ35_COCSC	I0YIZ1_COCSC	I0YJ35	I0YIZ1	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family.	Protein kinase domain-containing protein.	0.861
I0YJ35_COCSC	I0YZV7_COCSC	I0YJ35	I0YZV7	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family.	Signal peptidase complex subunit 3; Microsomal signal peptidase is a membrane-bound endoproteinase that removes signal peptides from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Belongs to the SPCS3 family.	0.954
I0YJ35_COCSC	I0Z2T5_COCSC	I0YJ35	I0Z2T5	Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family.	Uncharacterized protein.	0.958
I0YKR4_COCSC	I0YIZ1_COCSC	I0YKR4	I0YIZ1	Kinase-like protein.	Protein kinase domain-containing protein.	0.501
I0YL80_COCSC	I0YIZ1_COCSC	I0YL80	I0YIZ1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.978
I0YPZ9_COCSC	I0YIZ1_COCSC	I0YPZ9	I0YIZ1	Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.	Protein kinase domain-containing protein.	0.692
I0YWK3_COCSC	I0YIZ1_COCSC	I0YWK3	I0YIZ1	DNA ligase.	Protein kinase domain-containing protein.	0.637