I0YJ84_COCSC protein (Coccomyxa subellipsoidea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I0YJ84_COCSC

Uncharacterized protein. (1102 aa)

Predicted Functional Partners:

I0YRE0_COCSC

0.979

I0YKC1_COCSC

0.690

I0YQH5_COCSC

0.690

I0Z9Z9_COCSC

0.690

I0Z7S5_COCSC

0.674

I0YRA3_COCSC

0.657

I0Z3M2_COCSC

0.625

I0Z9H2_COCSC

0.608

I0YMM1_COCSC

0.604

I0YRP9_COCSC

0.563

Your Current Organism:

Coccomyxa subellipsoidea

NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I0YJ84_COCSC	I0YKC1_COCSC	I0YJ84	I0YKC1	Uncharacterized protein.	FHA domain-containing protein.	0.690
I0YJ84_COCSC	I0YMM1_COCSC	I0YJ84	I0YMM1	Uncharacterized protein.	Uncharacterized protein.	0.604
I0YJ84_COCSC	I0YQH5_COCSC	I0YJ84	I0YQH5	Uncharacterized protein.	HARE-HTH domain-containing protein.	0.690
I0YJ84_COCSC	I0YRA3_COCSC	I0YJ84	I0YRA3	Uncharacterized protein.	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.657
I0YJ84_COCSC	I0YRE0_COCSC	I0YJ84	I0YRE0	Uncharacterized protein.	MPN domain-containing protein.	0.979
I0YJ84_COCSC	I0YRP9_COCSC	I0YJ84	I0YRP9	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.563
I0YJ84_COCSC	I0Z3M2_COCSC	I0YJ84	I0Z3M2	Uncharacterized protein.	Bromo domain-containing protein.	0.625
I0YJ84_COCSC	I0Z7S5_COCSC	I0YJ84	I0Z7S5	Uncharacterized protein.	Putative Deoxyuridine 5'-triphosphate nucleotidohydrolase.	0.674
I0YJ84_COCSC	I0Z9H2_COCSC	I0YJ84	I0Z9H2	Uncharacterized protein.	Cyclin-like protein; Belongs to the cyclin family.	0.608
I0YJ84_COCSC	I0Z9Z9_COCSC	I0YJ84	I0Z9Z9	Uncharacterized protein.	Uncharacterized protein.	0.690
I0YKC1_COCSC	I0YJ84_COCSC	I0YKC1	I0YJ84	FHA domain-containing protein.	Uncharacterized protein.	0.690
I0YMM1_COCSC	I0YJ84_COCSC	I0YMM1	I0YJ84	Uncharacterized protein.	Uncharacterized protein.	0.604
I0YQH5_COCSC	I0YJ84_COCSC	I0YQH5	I0YJ84	HARE-HTH domain-containing protein.	Uncharacterized protein.	0.690
I0YRA3_COCSC	I0YJ84_COCSC	I0YRA3	I0YJ84	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	Uncharacterized protein.	0.657
I0YRE0_COCSC	I0YJ84_COCSC	I0YRE0	I0YJ84	MPN domain-containing protein.	Uncharacterized protein.	0.979
I0YRE0_COCSC	I0Z3M2_COCSC	I0YRE0	I0Z3M2	MPN domain-containing protein.	Bromo domain-containing protein.	0.824
I0YRE0_COCSC	I0Z9H2_COCSC	I0YRE0	I0Z9H2	MPN domain-containing protein.	Cyclin-like protein; Belongs to the cyclin family.	0.978
I0YRP9_COCSC	I0YJ84_COCSC	I0YRP9	I0YJ84	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.563
I0Z3M2_COCSC	I0YJ84_COCSC	I0Z3M2	I0YJ84	Bromo domain-containing protein.	Uncharacterized protein.	0.625
I0Z3M2_COCSC	I0YRE0_COCSC	I0Z3M2	I0YRE0	Bromo domain-containing protein.	MPN domain-containing protein.	0.824