STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0YMX2_COCSCDiaminopimelate epimerase. (292 aa)    
Predicted Functional Partners:
I0YSN0_COCSC
Diaminopimelate decarboxylase.
  
 0.969
I0YWG6_COCSC
LL-diaminopimelate aminotransferase.
  
 0.951
I0YR20_COCSC
Carbamoyl-phosphate synthase.
    
 0.910
I0YW85_COCSC
IGPS domain-containing protein.
     
 0.906
I0YXA4_COCSC
Aspartate semialdehyde dehydrogenase.
  
  
 0.901
I0Z626_COCSC
Aspartokinase; Belongs to the aspartokinase family.
  
  
 0.693
I0YPB1_COCSC
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide isomerase.
  
  
 0.692
I0YWV0_COCSC
Argininosuccinate lyase.
     
 0.681
I0ZAF0_COCSC
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
     
 0.680
I0YIX7_COCSC
Argininosuccinate synthase.
     
 0.675
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
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