STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0YTD3_COCSCSRP40_C domain-containing protein. (476 aa)    
Predicted Functional Partners:
I0YRS0_COCSC
Nop-domain-containing protein.
   
 
 0.958
I0Z496_COCSC
Nop-domain-containing protein.
   
 
 0.945
I0Z723_COCSC
Fibrillarin.
   
 
 0.934
I0Z8Y8_COCSC
Ribosomal protein L1.
   
   0.802
I0YNH8_COCSC
Putative rRNA pseudouridine synthase.
   
 
 0.794
I0YQI1_COCSC
Putative tRNA pseudouridine synthase.
   
 
 0.794
I0Z3R9_COCSC
Uncharacterized protein.
   
    0.786
I0Z275_COCSC
RWP-RK domain-containing protein.
   
  
 0.775
I0YY81_COCSC
Ubiquitin-like domain-containing protein.
   
  
 0.774
I0YR41_COCSC
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.754
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
Server load: low (30%) [HD]