STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0Z847_COCSCDNA repair helicase. (771 aa)    
Predicted Functional Partners:
I0YM12_COCSC
Uncharacterized protein.
    
 0.997
I0YPN8_COCSC
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.997
I0Z1L5_COCSC
Transcription factor TFIIH, 44 kDa subunit.
    
 0.997
I0Z664_COCSC
DNA repair helicase rad25.
   
 0.997
I0Z6M2_COCSC
Transcription factor Tfb4.
    
 0.997
I0Z7J7_COCSC
MAT1 domain-containing protein.
    
 0.997
I0Z7S7_COCSC
Cyclin-like protein; Belongs to the cyclin family.
    
 0.993
I0Z8M7_COCSC
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.988
I0Z2U2_COCSC
Uncharacterized protein.
    
 0.981
I0YIS9_COCSC
Cyclin-like protein.
    
 0.978
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.