Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VS_0688 | VS_0689 | VS_0688 | VS_0689 | Putative AmpG protein. | Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.663 |
VS_0688 | VS_0690 | VS_0688 | VS_0690 | Putative AmpG protein. | Putative lipoprotein. | 0.662 |
VS_0688 | VS_0692 | VS_0688 | VS_0692 | Putative AmpG protein. | Cell division protein BolA; Belongs to the BolA/IbaG family. | 0.426 |
VS_0688 | rlmG | VS_0688 | VS_0691 | Putative AmpG protein. | Putative ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.544 |
VS_0689 | VS_0688 | VS_0689 | VS_0688 | Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Putative AmpG protein. | 0.663 |
VS_0689 | VS_0690 | VS_0689 | VS_0690 | Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Putative lipoprotein. | 0.800 |
VS_0689 | VS_0692 | VS_0689 | VS_0692 | Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Cell division protein BolA; Belongs to the BolA/IbaG family. | 0.471 |
VS_0689 | rlmG | VS_0689 | VS_0691 | Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Putative ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.632 |
VS_0690 | VS_0688 | VS_0690 | VS_0688 | Putative lipoprotein. | Putative AmpG protein. | 0.662 |
VS_0690 | VS_0689 | VS_0690 | VS_0689 | Putative lipoprotein. | Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.800 |
VS_0690 | VS_0692 | VS_0690 | VS_0692 | Putative lipoprotein. | Cell division protein BolA; Belongs to the BolA/IbaG family. | 0.471 |
VS_0690 | rlmG | VS_0690 | VS_0691 | Putative lipoprotein. | Putative ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.632 |
VS_0692 | VS_0688 | VS_0692 | VS_0688 | Cell division protein BolA; Belongs to the BolA/IbaG family. | Putative AmpG protein. | 0.426 |
VS_0692 | VS_0689 | VS_0692 | VS_0689 | Cell division protein BolA; Belongs to the BolA/IbaG family. | Peptidyl-prolyl cis-trans isomerase A; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.471 |
VS_0692 | VS_0690 | VS_0692 | VS_0690 | Cell division protein BolA; Belongs to the BolA/IbaG family. | Putative lipoprotein. | 0.471 |
VS_0692 | rlmG | VS_0692 | VS_0691 | Cell division protein BolA; Belongs to the BolA/IbaG family. | Putative ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.569 |
VS_2010 | rlmG | VS_2010 | VS_0691 | Hypothetical protein. | Putative ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.537 |
bioB | rlmG | VS_2040 | VS_0691 | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | Putative ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.550 |
obg | rlmG | VS_0363 | VS_0691 | GTP1/Obg family protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Putative ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. | 0.621 |
obg | rplA | VS_0363 | VS_2967 | GTP1/Obg family protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.901 |
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