Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VS_0949 | VS_0950 | VS_0949 | VS_0950 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0352 family. | 0.887 |
VS_0949 | VS_0951 | VS_0949 | VS_0951 | Hypothetical protein. | Nucleoid-associated protein ndpA. | 0.864 |
VS_0949 | VS_0999 | VS_0949 | VS_0999 | Hypothetical protein. | Hypothetical membrane protein. | 0.674 |
VS_0949 | VS_2477 | VS_0949 | VS_2477 | Hypothetical protein. | Lipoprotein NlpI; May be involved in cell division. | 0.498 |
VS_0949 | lptC | VS_0949 | VS_2754 | Hypothetical protein. | Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. | 0.557 |
VS_0949 | rlmM | VS_0949 | VS_2396 | Hypothetical protein. | Predicted SAM-dependent methyltransferase; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. | 0.444 |
VS_0949 | rraB | VS_0949 | VS_2737 | Hypothetical protein. | Hypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. | 0.580 |
VS_0949 | seqA | VS_0949 | VS_2253 | Hypothetical protein. | Protein seqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. | 0.540 |
VS_0949 | yihI | VS_0949 | VS_0114 | Hypothetical protein. | Hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. | 0.734 |
VS_0950 | VS_0949 | VS_0950 | VS_0949 | Hypothetical protein; Belongs to the UPF0352 family. | Hypothetical protein. | 0.887 |
VS_0950 | VS_0951 | VS_0950 | VS_0951 | Hypothetical protein; Belongs to the UPF0352 family. | Nucleoid-associated protein ndpA. | 0.845 |
VS_0950 | VS_0999 | VS_0950 | VS_0999 | Hypothetical protein; Belongs to the UPF0352 family. | Hypothetical membrane protein. | 0.737 |
VS_0950 | VS_1468 | VS_0950 | VS_1468 | Hypothetical protein; Belongs to the UPF0352 family. | Universal stress protein E. | 0.600 |
VS_0950 | VS_2477 | VS_0950 | VS_2477 | Hypothetical protein; Belongs to the UPF0352 family. | Lipoprotein NlpI; May be involved in cell division. | 0.743 |
VS_0950 | lptC | VS_0950 | VS_2754 | Hypothetical protein; Belongs to the UPF0352 family. | Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family. | 0.716 |
VS_0950 | rraB | VS_0950 | VS_2737 | Hypothetical protein; Belongs to the UPF0352 family. | Hypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. | 0.746 |
VS_0950 | seqA | VS_0950 | VS_2253 | Hypothetical protein; Belongs to the UPF0352 family. | Protein seqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated. | 0.774 |
VS_0950 | yihI | VS_0950 | VS_0114 | Hypothetical protein; Belongs to the UPF0352 family. | Hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. | 0.736 |
VS_0951 | VS_0949 | VS_0951 | VS_0949 | Nucleoid-associated protein ndpA. | Hypothetical protein. | 0.864 |
VS_0951 | VS_0950 | VS_0951 | VS_0950 | Nucleoid-associated protein ndpA. | Hypothetical protein; Belongs to the UPF0352 family. | 0.845 |
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