STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VS_II0943ABC transporter: Substrate binding protein precursor. (292 aa)    
Predicted Functional Partners:
rbsA
ABC transporter: two domain ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.999
VS_II0942
ABC transporter: Transmembrane protein; Belongs to the binding-protein-dependent transport system permease family.
 0.999
VS_1315
Putative two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.993
VS_0477
Aerobic respiration control sensor protein ArcB.
  
 0.991
VS_0964
Sensory box histidine kinase/response regulator.
   
 0.991
VS_1155
Sensory box histidine kinase/response regulator.
   
 0.991
VS_2614
Sensor protein barA.
   
 0.990
VS_II1065
Hypothetical protein.
   
 0.987
VS_1129
Signal transduction histidine kinase.
  
 0.976
VS_1456
Signal transduction histidine kinase.
  
 0.973
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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