STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VS_II0988Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (495 aa)    
Predicted Functional Partners:
vasF
Type VI Secretion System, VasF; Function of strongly homologous gene; transporter.
 
  
 0.964
VS_II0987
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.961
VS_II0986
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.952
VS_II0995
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.845
VS_II0990
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.799
VS_1321
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.797
VS_1319
Hypothetical protein; No homology to any previously reported sequences.
 
  
 0.791
VS_II0991
Putative IcmF-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.791
VS_II0989
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.790
VS_II0998
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.790
Your Current Organism:
Vibrio tasmaniensis
NCBI taxonomy Id: 575788
Other names: V. tasmaniensis LGP32, Vibrio lentus MEL32, Vibrio splendidus LGP32, Vibrio tasmaniensis LGP32
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