STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
17.t000123-ketoacyl-CoA synthase. (478 aa)    
Predicted Functional Partners:
78.t00014
Metallo-beta-lactamase family protein.
   
 0.718
81.t00015
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.689
200.t00008
RNA polymerase subunit Rpb5, putative.
   
 0.640
68.t00049
Geranylgeranyl pyrophosphate synthase, putative; Belongs to the FPP/GGPP synthase family.
   
 
 0.638
161.t00001
V-type proton ATPase subunit; Subunit of the integral membrane V0 complex of vacuolar ATPase. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. Belongs to the V-ATPase V0D/AC39 subunit family.
   
 0.627
51.t00031
DNA-directed RNA polymerases I, II, and III 23 kDa, putative.
   
  0.614
289.t00003
Vacuolar ATP synthase proteolipid subunit, putative; Belongs to the V-ATPase proteolipid subunit family.
   
 0.613
5.t00058
Transporter, major facilitator family.
   
 0.610
162.t00003
DNA-directed RNA polymerase II subunit, putative.
   
  0.610
EHI_094800
Major facilitator superfamily protein.
    
 0.604
Your Current Organism:
Entamoeba histolytica
NCBI taxonomy Id: 5759
Other names: E. histolytica
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