STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D2UXY2_NAEGRProtein transport protein sec16; Belongs to the SEC16 family. (1290 aa)    
Predicted Functional Partners:
D2V6F0_NAEGR
Sec13 protein; Belongs to the WD repeat SEC13 family.
    
 0.998
D2VIE0_NAEGR
SEC24-related protein.
   
 0.984
D2VE50_NAEGR
Predicted protein.
   
 0.981
D2VZ24_NAEGR
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.981
D2W2P0_NAEGR
Predicted protein.
   
 0.958
D2VTI7_NAEGR
Predicted protein.
   
 
 0.819
D2VCI4_NAEGR
ARF/SAR family small GTPase; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.817
D2VEW4_NAEGR
ARF/SAR family small GTPase; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.817
D2W6C2_NAEGR
ARF/SAR family small GTPase; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.817
D2VIH0_NAEGR
Predicted protein; Belongs to the synaptobrevin family.
   
 
 0.813
Your Current Organism:
Naegleria gruberi
NCBI taxonomy Id: 5762
Other names: N. gruberi
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