D8Q280_SCHCM protein (Schizophyllum commune)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8Q280_SCHCM

Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (469 aa)

Predicted Functional Partners:

D8QJ95_SCHCM

0.994

D8PNA8_SCHCM

0.948

D8PQH1_SCHCM

0.930

D8PRF6_SCHCM

0.930

D8PW50_SCHCM

0.930

D8Q7M0_SCHCM

0.930

D8Q8W4_SCHCM

0.930

D8QD60_SCHCM

0.930

D8QJX8_SCHCM

0.930

D8QK42_SCHCM

0.930

Your Current Organism:

Schizophyllum commune

NCBI taxonomy Id: 578458
Other names: S. commune H4-8, Schizophyllum commune H4-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8PNA8_SCHCM	D8Q280_SCHCM	D8PNA8	D8Q280	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.948
D8PNA8_SCHCM	D8QJ95_SCHCM	D8PNA8	D8QJ95	Uncharacterized protein.	N-acetyltransferase domain-containing protein; In the N-terminal section; belongs to the acetylglutamate kinase family.	0.655
D8PQH1_SCHCM	D8Q280_SCHCM	D8PQH1	D8Q280	RWD domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.930
D8PQH1_SCHCM	D8QJ95_SCHCM	D8PQH1	D8QJ95	RWD domain-containing protein; Belongs to the aldehyde dehydrogenase family.	N-acetyltransferase domain-containing protein; In the N-terminal section; belongs to the acetylglutamate kinase family.	0.612
D8PRF6_SCHCM	D8Q280_SCHCM	D8PRF6	D8Q280	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.930
D8PW50_SCHCM	D8Q280_SCHCM	D8PW50	D8Q280	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.930
D8Q280_SCHCM	D8PNA8_SCHCM	D8Q280	D8PNA8	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Uncharacterized protein.	0.948
D8Q280_SCHCM	D8PQH1_SCHCM	D8Q280	D8PQH1	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	RWD domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.930
D8Q280_SCHCM	D8PRF6_SCHCM	D8Q280	D8PRF6	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.930
D8Q280_SCHCM	D8PW50_SCHCM	D8Q280	D8PW50	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.930
D8Q280_SCHCM	D8Q7M0_SCHCM	D8Q280	D8Q7M0	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.930
D8Q280_SCHCM	D8Q8W4_SCHCM	D8Q280	D8Q8W4	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.930
D8Q280_SCHCM	D8QD60_SCHCM	D8Q280	D8QD60	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.930
D8Q280_SCHCM	D8QJ95_SCHCM	D8Q280	D8QJ95	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	N-acetyltransferase domain-containing protein; In the N-terminal section; belongs to the acetylglutamate kinase family.	0.994
D8Q280_SCHCM	D8QJX8_SCHCM	D8Q280	D8QJX8	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.930
D8Q280_SCHCM	D8QK42_SCHCM	D8Q280	D8QK42	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.930
D8Q7M0_SCHCM	D8Q280_SCHCM	D8Q7M0	D8Q280	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.930
D8Q8W4_SCHCM	D8Q280_SCHCM	D8Q8W4	D8Q280	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.930
D8QD60_SCHCM	D8Q280_SCHCM	D8QD60	D8Q280	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.930
D8QJ95_SCHCM	D8PNA8_SCHCM	D8QJ95	D8PNA8	N-acetyltransferase domain-containing protein; In the N-terminal section; belongs to the acetylglutamate kinase family.	Uncharacterized protein.	0.655