AMAG_02338 protein (Allomyces macrogynus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMAG_02338

Uncharacterized protein. (896 aa)

Predicted Functional Partners:

YTM1

0.984

AMAG_08512

0.972

AMAG_09924

0.972

AMAG_00115

0.956

AMAG_09205

0.956

AMAG_10677

0.955

AMAG_13350

0.950

AMAG_13602

0.950

AMAG_03067

0.949

AMAG_10342

0.949

Your Current Organism:

Allomyces macrogynus

NCBI taxonomy Id: 578462
Other names: A. macrogynus ATCC 38327, Allomyces macrogynus ATCC 38327

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMAG_00115	AMAG_02338	A0A0L0RUP1	A0A0L0S1X2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.956
AMAG_00115	AMAG_03067	A0A0L0RUP1	A0A0L0S4K2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.836
AMAG_00115	AMAG_08512	A0A0L0RUP1	A0A0L0SLP2	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA helicase.	0.927
AMAG_00115	AMAG_09205	A0A0L0RUP1	A0A0L0SNR2	Uncharacterized protein; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase DBP10.	0.955
AMAG_00115	AMAG_09924	A0A0L0RUP1	A0A0L0SQE6	Uncharacterized protein; Belongs to the DEAD box helicase family.	RNA helicase.	0.927
AMAG_00115	AMAG_10342	A0A0L0RUP1	A0A0L0SUE2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.836
AMAG_00115	AMAG_13350	A0A0L0RUP1	A0A0L0T2A5	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.835
AMAG_00115	AMAG_13602	A0A0L0RUP1	A0A0L0T3B1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.835
AMAG_00115	YTM1	A0A0L0RUP1	A0A0L0TDN1	Uncharacterized protein; Belongs to the DEAD box helicase family.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.904
AMAG_02338	AMAG_00115	A0A0L0S1X2	A0A0L0RUP1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.956
AMAG_02338	AMAG_03067	A0A0L0S1X2	A0A0L0S4K2	Uncharacterized protein.	Uncharacterized protein.	0.949
AMAG_02338	AMAG_08512	A0A0L0S1X2	A0A0L0SLP2	Uncharacterized protein.	RNA helicase.	0.972
AMAG_02338	AMAG_09205	A0A0L0S1X2	A0A0L0SNR2	Uncharacterized protein.	ATP-dependent RNA helicase DBP10.	0.956
AMAG_02338	AMAG_09924	A0A0L0S1X2	A0A0L0SQE6	Uncharacterized protein.	RNA helicase.	0.972
AMAG_02338	AMAG_10342	A0A0L0S1X2	A0A0L0SUE2	Uncharacterized protein.	Uncharacterized protein.	0.949
AMAG_02338	AMAG_10677	A0A0L0S1X2	A0A0L0SR86	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.955
AMAG_02338	AMAG_13350	A0A0L0S1X2	A0A0L0T2A5	Uncharacterized protein.	Uncharacterized protein.	0.950
AMAG_02338	AMAG_13602	A0A0L0S1X2	A0A0L0T3B1	Uncharacterized protein.	Uncharacterized protein.	0.950
AMAG_02338	YTM1	A0A0L0S1X2	A0A0L0TDN1	Uncharacterized protein.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.984
AMAG_03067	AMAG_00115	A0A0L0S4K2	A0A0L0RUP1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.836