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Slit_0092 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0092" - ABC transporter in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0092ABC transporter (301 aa)    
Predicted Functional Partners:
Slit_0090
NMT1/THI5 like domain protein (332 aa)
 
   
  0.988
Slit_0091
Binding-protein-dependent transport systems inner membrane component (325 aa)
   
  0.981
Slit_0093
Creatininase (256 aa)
 
          0.966
Slit_0095
CopG family transcriptional regulator; Transcriptional regulator (169 aa)
 
          0.918
pstB
Phosphate ABC transporter ATPase; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system (258 aa)
   
   
 
0.914
Slit_0094
Glutamine synthetase, type III (453 aa)
 
 
 
  0.882
Slit_0155
Nitrate transport ATP-binding protein (478 aa)
   
  0.817
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner (227 aa)
   
 
 
0.804
Slit_2575
ABC transporter (235 aa)
   
 
 
0.802
Slit_2079
ABC transporter (226 aa)
   
 
 
0.794
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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