STRINGSTRING
Slit_0095 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0095" - CopG family transcriptional regulator in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0095CopG family transcriptional regulator; Transcriptional regulator (169 aa)    
Predicted Functional Partners:
Slit_0091
Binding-protein-dependent transport systems inner membrane component (325 aa)
 
          0.928
Slit_0092
ABC transporter (301 aa)
 
          0.918
Slit_0094
Glutamine synthetase, type III (453 aa)
 
          0.898
Slit_0090
NMT1/THI5 like domain protein (332 aa)
 
          0.896
Slit_0093
Creatininase (256 aa)
 
          0.873
Slit_0080
Urea carboxylase (1207 aa)
              0.503
Slit_2423
(NiFe) hydrogenase maturation protein HypF (767 aa)
 
          0.485
folE2
Hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate (265 aa)
         
  0.430
hypA
Hydrogenase nickel insertion protein HypA; Probably plays a role in a hydrogenase nickel cofactor insertion step (113 aa)
         
  0.429
Slit_2422
Hydrogenase assembly chaperone hypC/hupF (81 aa)
              0.414
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (8%) [HD]