STRINGSTRING
Slit_0365 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0365" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0365Hypothetical protein (98 aa)    
Predicted Functional Partners:
Slit_0364
AMP-dependent synthetase and ligase (444 aa)
          0.991
Slit_0368
Hypothetical protein (774 aa)
 
          0.976
Slit_0367
Transmembrane protein (190 aa)
 
          0.972
Slit_0363
Hypothetical protein (218 aa)
 
          0.967
Slit_0366
Lipid A biosynthesis acyltransferase (304 aa)
 
          0.956
Slit_0354
Hypothetical protein (87 aa)
 
 
  0.915
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis (77 aa)
   
 
  0.874
Slit_0352
Hypothetical protein (147 aa)
 
          0.849
Slit_0350
Beta-ketoacyl synthase (397 aa)
 
 
  0.831
Slit_0351
Hypothetical protein (265 aa)
 
          0.760
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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