STRINGSTRING
Slit_0493 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0493" - General secretion pathway protein J in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0493General secretion pathway protein J (201 aa)    
Predicted Functional Partners:
Slit_0494
General secretion pathway protein I (124 aa)
 
  0.997
Slit_0496
General secretion pathway protein G (146 aa)
 
  0.993
Slit_0492
General secretion pathway protein K (305 aa)
 
 
  0.988
Slit_1832
General secretion pathway protein G (146 aa)
 
  0.982
Slit_0491
General secretion pathway L (402 aa)
 
          0.959
Slit_0499
General secretion pathway protein D (690 aa)
 
   
  0.936
Slit_0497
General secretion pathway protein F (407 aa)
 
 
  0.906
Slit_0489
Type II secretion system protein N (246 aa)
              0.883
Slit_0495
General secretion pathway protein H (148 aa)
              0.859
Slit_0490
General secretion pathway M protein (167 aa)
              0.859
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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