STRINGSTRING
Slit_0536 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0536" - Phytochrome sensor protein in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0536Phytochrome sensor protein (797 aa)    
Predicted Functional Partners:
Slit_2699
Type II secretion system F domain protein (405 aa)
 
 
  0.967
Slit_0684
Type II secretion system F domain protein (400 aa)
 
 
  0.967
Slit_0497
General secretion pathway protein F (407 aa)
 
 
  0.965
Slit_2607
Type II secretion system F domain protein (413 aa)
 
 
  0.963
Slit_1831
Type II secretion system F domain protein (396 aa)
 
 
  0.948
Slit_1832
General secretion pathway protein G (146 aa)
   
  0.867
Slit_0496
General secretion pathway protein G (146 aa)
   
  0.867
Slit_0534
Beta-lactamase domain protein (254 aa)
 
          0.855
Slit_0499
General secretion pathway protein D (690 aa)
 
 
  0.847
Slit_2700
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue (286 aa)
 
 
  0.847
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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