STRINGSTRING
Slit_0603 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0603" - DegT/DnrJ/EryC1/StrS aminotransferase in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0603DegT/DnrJ/EryC1/StrS aminotransferase (370 aa)    
Predicted Functional Partners:
Slit_0604
WbqC-like family protein (233 aa)
 
          0.972
Slit_0606
Transferase (219 aa)
 
 
  0.959
Slit_0608
Hypothetical protein (315 aa)
 
          0.950
Slit_0602
Methyltransferase type 12 (931 aa)
 
          0.886
Slit_0605
Methyltransferase type 12 (213 aa)
              0.861
Slit_0610
Glycosyl transferase family 2 (803 aa)
 
          0.857
Slit_0601
Hypothetical protein (698 aa)
 
          0.846
Slit_0607
Methyltransferase FkbM family (267 aa)
              0.840
Slit_0609
Phytanoyl-CoA dioxygenase (323 aa)
              0.837
Slit_2903
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (527 aa)
         
  0.725
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (6%) [HD]