STRINGSTRING
Slit_0620 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0620" - Flagellin domain protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0620Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (238 aa)    
Predicted Functional Partners:
Slit_0617
Flagellar protein FliS (154 aa)
 
 
  0.998
Slit_0618
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end (468 aa)
 
 
  0.987
Slit_0566
Flagellar basal-body rod protein FlgC (134 aa)
 
   
  0.944
Slit_0568
Fagellar hook-basal body protein (405 aa)
 
   
  0.938
Slit_0597
Flagellar motor switch protein FliG (329 aa)
 
   
  0.923
Slit_0574
Flagellar hook-associated protein FlgK (640 aa)
 
   
  0.914
Slit_0569
Flagellar basal-body rod protein FlgF (247 aa)
 
   
  0.910
Slit_0565
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body (134 aa)
 
 
  0.906
Slit_2087
PilC (1618 aa)
   
     
  0.905
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes (247 aa)
 
   
  0.902
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (7%) [HD]