STRINGSTRING
Slit_0821 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0821" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0821Hypothetical protein (267 aa)    
Predicted Functional Partners:
Slit_0823
Iron-sulfur cluster binding protein (477 aa)
 
  0.999
Slit_0822
Hypothetical protein (223 aa)
 
   
  0.984
Slit_1838
Succinate dehydrogenase and fumarate reductase iron-sulfur protein (231 aa)
 
 
 
  0.930
Slit_0820
Hypothetical protein (96 aa)
              0.703
Slit_0827
FAD linked oxidase domain protein (493 aa)
   
  0.672
Slit_0826
FAD linked oxidase domain protein (354 aa)
 
   
  0.651
Slit_2486
Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (1645 aa)
   
   
  0.631
Slit_0120
FAD linked oxidase domain protein (470 aa)
 
   
  0.568
Slit_0115
Glutamate synthase (ferredoxin) (1565 aa)
   
   
  0.557
Slit_1617
Nickel-dependent hydrogenase large subunit (589 aa)
   
 
  0.546
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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