STRINGSTRING
Slit_0828 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_0828" - Pirin in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_0828Pirin (233 aa)    
Predicted Functional Partners:
Slit_0824
Serine--pyruvate transaminase (393 aa)
   
        0.631
Slit_1350
Pirin (288 aa)
 
   
0.626
Slit_0827
FAD linked oxidase domain protein (493 aa)
   
        0.615
Slit_0826
FAD linked oxidase domain protein (354 aa)
   
        0.615
Slit_0825
Hypothetical protein (415 aa)
              0.612
Slit_1347
NADH-flavin oxidoreductase/NADH oxidase (355 aa)
 
   
  0.525
Slit_2961
Flavodoxin (187 aa)
 
        0.516
Slit_0829
Hypothetical protein (210 aa)
              0.510
Slit_0662
NADH-flavin oxidoreductase/NADH oxidase (360 aa)
   
        0.428
Slit_1458
Extradiol ring-cleavage dioxygenase class III protein subunit B (262 aa)
 
   
  0.416
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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