STRINGSTRING
Slit_1013 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1013" - Transcriptional regulator in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1013Transcriptional regulator (222 aa)    
Predicted Functional Partners:
Slit_1012
Histidine kinase (447 aa)
   
  0.987
Slit_0637
MgtC/SapB transporter (249 aa)
       
 
  0.946
Slit_2493
Integral membrane sensor signal transduction histidine kinase (464 aa)
 
  0.889
Slit_2939
Response regulator receiver protein (121 aa)
   
     
  0.750
Slit_1163
Response regulator receiver protein (175 aa)
   
          0.746
Slit_1014
Cytochrome C (166 aa)
              0.739
Slit_1015
Hypothetical protein (140 aa)
              0.732
Slit_2582
Integral membrane sensor hybrid histidine kinase (606 aa)
 
 
  0.720
Slit_0262
Integral membrane sensor signal transduction histidine kinase (416 aa)
 
          0.715
Slit_2940
Response regulator receiver protein (136 aa)
   
     
  0.703
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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