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Slit_1096 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1096" - Tn7-like transposition protein B in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1096Tn7-like transposition protein B (677 aa)    
Predicted Functional Partners:
Slit_1095
Hypothetical protein (325 aa)
              0.869
Slit_1097
Hypothetical protein (442 aa)
              0.868
Slit_1092
Hypothetical protein (500 aa)
 
          0.826
Slit_1098
Hypothetical protein (156 aa)
              0.671
Slit_2471
Hypothetical protein (282 aa)
   
          0.553
Slit_1237
7TM domain sensor diguanylate cyclase (544 aa)
   
          0.514
Slit_1094
Helix-turn-helix domain protein (124 aa)
              0.482
Slit_2006
Serine/threonine protein kinase (801 aa)
   
          0.481
Slit_1979
Hypothetical protein (126 aa)
   
          0.463
Slit_1605
ABC transporter (780 aa)
   
          0.442
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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