STRINGSTRING
Slit_1134 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1134" - Hypothetical protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1134Hypothetical protein (396 aa)    
Predicted Functional Partners:
Slit_1135
ABC transporter (235 aa)
 
          0.979
Slit_1133
Efflux transporter, RND family, MFP subunit (387 aa)
 
          0.972
Slit_1136
TetR family transcriptional regulator (207 aa)
 
          0.963
Slit_1848
Hypothetical protein (413 aa)
   
          0.502
Slit_1132
NnrS family protein (408 aa)
              0.484
Slit_1129
Nitrite reductase (NO-forming) (577 aa)
 
          0.443
Slit_0737
TetR family transcriptional regulator (193 aa)
              0.414
Slit_2575
ABC transporter (235 aa)
              0.404
Slit_2079
ABC transporter (226 aa)
              0.404
Slit_1489
ABC transporter (242 aa)
              0.404
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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