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Slit_1250 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1250" - Pseudouridine synthase in Sideroxydans lithotrophicus
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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[Homology]
Score
Slit_1250Pseudouridine synthase (241 aa)    
Predicted Functional Partners:
Slit_1251
Nitroreductase (198 aa)
              0.829
Slit_2366
Methyltransferase (179 aa)
 
        0.736
Slit_1757
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil (312 aa)
 
 
  0.734
Slit_1252
Major facilitator superfamily MFS_1 (414 aa)
   
        0.640
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (313 aa)
 
   
  0.636
Slit_2038
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil (331 aa)
 
 
  0.621
der
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis (465 aa)
 
   
  0.617
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity (359 aa)
 
      0.598
Slit_2060
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (568 aa)
   
      0.562
Slit_1465
Inosine-5’-monophosphate dehydrogenase (486 aa)
   
        0.547
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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