STRINGSTRING
Slit_1349 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1349" - YceI family protein in Sideroxydans lithotrophicus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1349YceI family protein (192 aa)    
Predicted Functional Partners:
Slit_1348
YceI family protein (188 aa)
 
          0.958
Slit_2051
Cytochrome B561 (180 aa)
        0.955
Slit_1350
Pirin (288 aa)
              0.817
Slit_2052
YceI family protein (187 aa)
 
          0.780
Slit_2245
Cytochrome B561 (171 aa)
 
        0.714
Slit_0172
Cytochrome B561 (182 aa)
        0.691
Slit_1347
NADH-flavin oxidoreductase/NADH oxidase (355 aa)
              0.578
Slit_1351
LysR family transcriptional regulator (301 aa)
              0.558
ppa
Inorganic diphosphatase (182 aa)
 
        0.506
Slit_1458
Extradiol ring-cleavage dioxygenase class III protein subunit B (262 aa)
         
  0.415
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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