STRINGSTRING
Slit_1375 protein (Sideroxydans lithotrophicus) - STRING interaction network
"Slit_1375" - Polysaccharide deacetylase in Sideroxydans lithotrophicus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1375Polysaccharide deacetylase (301 aa)    
Predicted Functional Partners:
Slit_1374
NAD-dependent epimerase/dehydratase (347 aa)
 
   
  0.970
Slit_1372
Glycosyl transferase family 2 (338 aa)
 
   
  0.961
Slit_1368
Glycosyl transferase family 39 (549 aa)
 
   
  0.952
Slit_1373
Formyl transferase domain protein (307 aa)
 
   
  0.945
Slit_0343
Transmembrane protein (547 aa)
 
   
  0.800
Slit_1369
Hypothetical protein (123 aa)
 
        0.784
Slit_1370
Glutamine--scyllo-inositol transaminase (373 aa)
   
  0.772
Slit_1376
Signal transduction protein (282 aa)
              0.686
Slit_0342
Glycosyl transferase family 39 (554 aa)
 
   
  0.637
Slit_2874
Glycosyl transferase family 2 (304 aa)
 
   
  0.546
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus, S. lithotrophicus ES-1, Siderooxidans, Siderooxidans lithoautotrophicus, Sideroxydans, Sideroxydans lithotrophicus, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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