STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1362PFAM: Cytochrome C biogenesis protein transmembrane region; InterPro IPR003834; KEGG: shw:Sputw3181_2951 cytochrome c biogenesis protein, transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: Cytochrome c biogenesis protein, transmembrane region. (228 aa)    
Predicted Functional Partners:
Tlie_1361
KEGG: shn:Shewana3_2349 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.786
Tlie_0472
Zinc/iron permease; PFAM: ZIP Zinc transporter; COGs: COG0428 divalent heavy-metal cations transporter; InterPro IPR003689; KEGG: cbf:CLI_1259 ZIP family zinc transporter; PFAM: zinc/iron permease; SPTR: Zinc transporter, ZIP family.
   
    0.705
Tlie_1360
PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; COGs: COG2217 Cation transport ATPase; InterProIPR001757: IPR000695: IPR018303: IPR017969: IPR 006121: IPR008250: IPR005834: IPR006403: IPR006416; KEGG: tpt:Tpet_0600 heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Heavy metal translocating P-type ATPa [...]
     
 0.615
Tlie_1359
PFAM: Heavy-metal-associated domain; InterPro IPR017969: IPR006121; KEGG: aco:Amico_1897 heavy metal transport/detoxification protein; PFAM: Heavy metal transport/detoxification protein; SPTR: Heavy metal transport/detoxification protein.
     
 0.614
Tlie_0329
TIGRFAM: small redox-active disulfide protein 2; InterPro IPR005243; KEGG: aco:Amico_0061 redox-active disulfide protein 2; SPTR: Redox-active disulfide protein 2; TIGRFAM: redox-active disulfide protein 2.
 
  
 0.603
Tlie_1363
Hypothetical protein; PFAM: Hydrogenase expression/synthesis hypA family; KEGG: tai:Taci_1360 hypothetical protein; SPTR: Protein with rubredoxin/rubrerythrin domain protein.
       0.522
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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