STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1664KEGG: aco:Amico_0379 hypothetical protein; SPTR: Putative uncharacterized protein. (323 aa)    
Predicted Functional Partners:
Tlie_1665
Protein of unknown function DUF6 transmembrane; PFAM: EamA-like transporter family; InterPro IPR000620; KEGG: drm:Dred_2925 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative membrane protein.
       0.741
Tlie_1663
Phospholipase D/Transphosphatidylase; COGs: COG1502 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase; InterPro IPR001736; KEGG: mes:Meso_3886 cardiolipin synthetase 2; PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; SPTR: Phospholipase D/Transphosphatidylase.
       0.610
Tlie_1662
PFAM: Peptidase family M20/M25/M40; COGs: COG4187 Arginine degradation protein (predicted deacylase); InterPro IPR002933: IPR012166; KEGG: aco:Amico_0153 peptidase M20; PFAM: peptidase M20; SPTR: Peptidase M20.
       0.559
Tlie_1661
Putative transcriptional regulator, GntR family; PFAM: Aminotransferase class I and II; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR004839; KEGG: aco:Amico_0227 putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; SPTR: Aminotransferase, class I and II family protein.
       0.520
Tlie_1666
PEBP family protein; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: Raf kinase inhibitor-like protein, YbhB/YbcL family; COGs: COG1881 Phospholipid-binding protein; InterPro IPR005247: IPR008914; KEGG: kcr:Kcr_0969 PEBP family protein; PFAM: PEBP family protein; SPTR: Phosphatidylethanolamine-binding protein.
       0.455
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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