STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlie_1763Hypothetical protein; PFAM: Mur ligase middle domain; KEGG: aco:Amico_0221 hypothetical protein; SPTR: Capsule biosynthesis protein. (336 aa)    
Predicted Functional Partners:
Tlie_1766
Integral membrane sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR005467: IPR003661: IPR003594: IPR004358; KEGG: tai:Taci_0139 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SPTR: Putative His Kinase A domain protein.
 
     0.886
Tlie_1761
PFAM: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro IPR007036; KEGG: tai:Taci_0137 succinylglutamate desuccinylase/aspartoacylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase; SPTR: Succinylglutamate desuccinylase/aspartoacylase family protein.
 
     0.866
Tlie_1759
PFAM: DctM-like transporters; COGs: COG1593 TRAP-type C4-dicarboxylate transport system large permease component; InterPro IPR004680; KEGG: tai:Taci_0135 TRAP C4-dicarboxylate transport system permease DctM subunit; PFAM: Citrate transporter; SPTR: C4-dicarboxylate anaerobic carrier family protein.
 
     0.858
Tlie_1767
PFAM: Response regulator receiver domain; COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789; KEGG: tai:Taci_0140 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator.
 
     0.836
Tlie_1764
TIGRFAM: poly-gamma-glutamate biosynthesis protein PgsC/CapC; KEGG: aco:Amico_0222 capsule biosynthesis protein CapC; SPTR: Capsule biosynthesis protein CapC.
       0.824
Tlie_1765
KEGG: aco:Amico_0223 hypothetical protein; SPTR: Putative membrane protein.
       0.824
Tlie_1762
Gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: tai:Taci_0138 gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; PRIAM: Gamma-glutamyltransferase; SPTR: Gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase.
 
     0.812
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
  
 0.741
Tlie_1652
KEGG: lmh:LMHCC_0760 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.741
Tlie_0070
Flagellar hook-associated protein 3; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3; COGs: COG1344 Flagellin and related hook-associated protein; InterPro IPR013384: IPR001492; KEGG: tai:Taci_0666 flagellin domain protein; PFAM: flagellin domain protein; SPTR: Flagellin domain protein; TIGRFAM: flagellar hook-associated protein 3.
  
   
 0.658
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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