Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SIQ26739.1 | SIR81394.1 | SAMN05421833_101337 | SAMN05421833_11633 | Protein of unknown function. | Exoribonuclease R. | 0.873 |
| SIQ26739.1 | rph | SAMN05421833_101337 | SAMN05421833_108130 | Protein of unknown function. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.769 |
| SIQ33175.1 | SIR81394.1 | SAMN05421833_101526 | SAMN05421833_11633 | ADP-ribose pyrophosphatase. | Exoribonuclease R. | 0.845 |
| SIQ33175.1 | rph | SAMN05421833_101526 | SAMN05421833_108130 | ADP-ribose pyrophosphatase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.769 |
| SIQ97758.1 | SIR81394.1 | SAMN05421833_10529 | SAMN05421833_11633 | Putative hydrolase of the HAD superfamily. | Exoribonuclease R. | 0.858 |
| SIQ97758.1 | SIS01917.1 | SAMN05421833_10529 | SAMN05421833_12319 | Putative hydrolase of the HAD superfamily. | Putative hydrolase of the HAD superfamily. | 0.610 |
| SIQ97758.1 | rph | SAMN05421833_10529 | SAMN05421833_108130 | Putative hydrolase of the HAD superfamily. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.780 |
| SIR26404.1 | SIR81394.1 | SAMN05421833_107149 | SAMN05421833_11633 | Ribonuclease D. | Exoribonuclease R. | 0.974 |
| SIR26404.1 | gltX | SAMN05421833_107149 | SAMN05421833_114131 | Ribonuclease D. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). | 0.789 |
| SIR26404.1 | rph | SAMN05421833_107149 | SAMN05421833_108130 | Ribonuclease D. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.995 |
| SIR26404.1 | rplJ | SAMN05421833_107149 | SAMN05421833_119189 | Ribonuclease D. | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.916 |
| SIR26404.1 | rplV | SAMN05421833_107149 | SAMN05421833_10213 | Ribonuclease D. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.830 |
| SIR81394.1 | SIQ26739.1 | SAMN05421833_11633 | SAMN05421833_101337 | Exoribonuclease R. | Protein of unknown function. | 0.873 |
| SIR81394.1 | SIQ33175.1 | SAMN05421833_11633 | SAMN05421833_101526 | Exoribonuclease R. | ADP-ribose pyrophosphatase. | 0.845 |
| SIR81394.1 | SIQ97758.1 | SAMN05421833_11633 | SAMN05421833_10529 | Exoribonuclease R. | Putative hydrolase of the HAD superfamily. | 0.858 |
| SIR81394.1 | SIR26404.1 | SAMN05421833_11633 | SAMN05421833_107149 | Exoribonuclease R. | Ribonuclease D. | 0.974 |
| SIR81394.1 | SIS01917.1 | SAMN05421833_11633 | SAMN05421833_12319 | Exoribonuclease R. | Putative hydrolase of the HAD superfamily. | 0.858 |
| SIR81394.1 | SIS08639.1 | SAMN05421833_11633 | SAMN05421833_126122 | Exoribonuclease R. | 8-oxo-dGTP pyrophosphatase MutT, NUDIX family. | 0.845 |
| SIR81394.1 | gltX | SAMN05421833_11633 | SAMN05421833_114131 | Exoribonuclease R. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). | 0.829 |
| SIR81394.1 | rph | SAMN05421833_11633 | SAMN05421833_108130 | Exoribonuclease R. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.995 |
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