STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR90196.1Endo-1,4-beta-xylanase (glycosyl hydrolase family 10). (479 aa)    
Predicted Functional Partners:
SIR77517.1
Ricin-type beta-trefoil lectin domain-containing protein.
 
     0.829
SIS23892.1
Endo-1,4-beta-xylanase.
 
     0.807
SIS25077.1
Endo-1,4-beta-xylanase.
 
     0.807
SIS01750.1
Ricin-type beta-trefoil lectin domain-containing protein.
 
     0.793
SIS00253.1
Ricin-type beta-trefoil lectin domain-containing protein.
 
  
  0.705
SIR96409.1
Pectate lyase.
  
     0.697
SIS16879.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.696
SIS25139.1
Arabinoxylan arabinofuranohydrolase.
 
  
  0.689
SIQ96880.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.677
SIR89420.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
     0.671
Your Current Organism:
Microbispora rosea
NCBI taxonomy Id: 58117
Other names: ATCC 12950, DSM 43839, IFO 14044, JCM 3006, M. rosea, NBRC 14044, NRRL B-2632, VKM Ac-634, Waksmania rosea
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.