STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_0792PFAM: protein of unknown function DUF481; KEGG: tgr:Tgr7_2791 hypothetical protein. (247 aa)    
Predicted Functional Partners:
Hbal_1213
SMART: Tetratricopeptide domain protein; KEGG: vha:VIBHAR_00632 hypothetical protein.
  
     0.671
Hbal_2484
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cps:CPS_4276 TonB-dependent receptor.
  
     0.623
Hbal_1207
KEGG: aha:AHA_3434 TonB system biopolymer transport component.
  
     0.595
Hbal_0415
TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: swp:swp_0096 TonB-dependent receptor, putative.
  
     0.556
Hbal_0693
PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1335 CzcC family heavy metal RND efflux outer membrane protein.
  
     0.534
Hbal_0402
Hypothetical protein; KEGG: cak:Caul_4512 TonB-dependent receptor plug.
  
     0.522
Hbal_1208
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pat:Patl_2989 MotA/TolQ/ExbB proton channel.
  
     0.507
Hbal_3014
Hypothetical protein; KEGG: ccv:CCV52592_1750 von Willebrand factor type A domain-containing protein.
  
     0.497
Hbal_1172
TIGRFAM: TonB family protein; KEGG: vsa:VSAL_II0901 TonB3 protein.
  
     0.483
Hbal_2670
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c0750 TonB-dependent receptor.
  
     0.480
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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