STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_1323TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; KEGG: rpc:RPC_1907 pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat. (629 aa)    
Predicted Functional Partners:
Hden_1320
Methanol dehydrogenase beta subunit; Catalyzes the oxidation of primary alcohols including methanol.
 
 
 0.998
Hden_1322
KEGG: rpc:RPC_1908 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3.
 
 
 0.986
Hden_1321
Cytochrome c class I; Electron acceptor for MDH. Acts in methanol oxidation.
 
 
 0.978
Hden_1313
PFAM: Polyketide cyclase/dehydrase; KEGG: rpe:RPE_3129 MxaD protein, putative.
 
  
  0.977
Hden_1316
KEGG: rpe:RPE_3132 von Willebrand factor, type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A.
 
  
  0.972
Hden_1314
SMART: von Willebrand factor type A; KEGG: rpc:RPC_1916 von Willebrand factor, type A.
 
  
  0.971
Hden_1317
KEGG: rpc:RPC_1913 MxaA protein, putative.
 
  
  0.969
Hden_1315
KEGG: rpc:RPC_1915 hypothetical protein.
 
  
  0.966
Hden_0783
PQQ-dependent enzyme-like protein; KEGG: azo:azo3865 putative quinoprotein ethanol dehydrogenase; PFAM: PQQ-dependent enzyme-like; Pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat.
  
  
 
0.924
Hden_0795
PFAM: cytochrome c class I; KEGG: mpt:Mpe_A1589 hypothetical protein.
 
 
 0.923
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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