STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caka_0021KEGG: ote:Oter_3931 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Caka_0020
KEGG: ote:Oter_3932 hypothetical protein.
     0.994
Caka_1463
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; KEGG: ote:Oter_4077 cytochrome c oxidase, cbb3- type, subunit I; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.977
Caka_0022
KEGG: ote:Oter_3930 hypothetical protein.
 
 
 0.965
Caka_0019
PFAM: Polysulphide reductase NrfD; KEGG: ote:Oter_3933 polysulphide reductase NrfD.
 
 
   0.962
Caka_0017
KEGG: ote:Oter_3935 cytochrome c family protein.
 
 
 
 0.957
Caka_0018
KEGG: ote:Oter_3934 Fe-S-cluster-containing hydrogenase components 1-like protein.
 
   0.947
Caka_0026
PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: ote:Oter_3927 cytochrome c oxidase mono-heme subunit/FixO.
  
 
 0.873
Caka_0025
KEGG: sru:SRU_0322 putative cytochrome-c oxidase; PFAM: cytochrome c oxidase subunit I.
  
 
 0.866
Caka_0027
PFAM: cytochrome c class I; KEGG: ote:Oter_3926 cytochrome c family protein.
 
     0.796
Caka_0023
KEGG: rmr:Rmar_0227 hypothetical protein.
       0.773
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.